Biology 1080

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General-Biology 1080

Fall 2005

 

Instructor: Dr. Cindy Jones

Email: cindyjones100@earthlink.net  Because I teach several classes at several places, please put Metro 1080 in the subject line – if not, you may inadvertently be deleted!

Text: Customized Biology 7th Edition, by Raven and Johnson

 

Biology 1080 is an introductory course intended for biology majors and will cover a wide variety of topics including basic chemistry, cellular and molecular biology, photosynthesis, genetics, and evolution.

 

General Information:  All students enrolled in biology 1080 must also register for the accompanying lab course (1090) as well. Also, if a student is planning to drop one of these courses, they must request an NC for both courses. Attendance in both lecture and laboratory sections is required. It is imperative that you are present to understand what is covered, as a good and complete set of lecture notes will be an important resource when studying for exams.

 

Grading Scale:           A = 90 - 100%
B = 80 - 89%
C = 70 - 79%
D = 60 - 69%
F = less than 60%

 

Exams:  There will be four exams in this course and a comprehensive final.  Each exam is worth 100 points.  There are no make-up exams.  However, I understand that sometimes life’s circumstances are out of your control.  Therefore, a Comprehensive Final will be given on the day and time announced in the Final Exam Schedule. If you miss a scheduled exam you must take this exam.  This final is optional to students who have taken all four in-class exams and wish to replace a low score.  If you have taken all four exams and the comprehensive exam is your lowest score, I will not use it in your final grade calculation.

Warning: Comprehensive exams are difficult and I recommend that you do your best to not be in a position where your grade is dependant on it.

 

Grade Disputes:  If you feel that there was a grading error or you would like to dispute a question or answer on an exam, you must submit in writing a formal and logical detailed dispute (w/ references from text if applicable) within one week of receiving your exam score. 

 

Students with Disabilities: If you qualify for accommodations under the Americans with Disabilities Act, then you need to notify me and the college that you need accommodations by September 7, 2004. 

 

Attendance Policy:  You are not required to attend class, but I strongly encourage it. I have seen that students who miss class do not score as high as students that attend all classes.  If you miss class you are required to get missed notes/handouts from a classmate.

No Credit Withdrawal Policy: Students who withdraw after the census date will receive an NC on their transcripts.  NC stands for No Credit and does not impact the student’s grade point average.

Withdrawal deadline for full-term courses with no signature required: 

see website http://www.mscd.edu/academic/acal.htm#200530-2

Withdrawal deadline for full-term courses with faculty signature required: 

see website http://www.mscd.edu/academic/acal.htm#200530-2

 

Incomplete Grade Policy:  A grade of “Incomplete” is reserved for students with a major, documented crisis the last couple of weeks of the semester which make them unable to complete the assignments.  A major crisis consists of something along the lines of major illness or a death in the family.  An Incomplete requires permission from the Chair of the Biology Department.  The Chair will provide the paperwork necessary to assign an Incomplete grade.  Incomplete grades are rarely given unless the student has a verifiable reason that he/she is unable to complete the work within the semester.

 

Religious Holidays:  If you are unable to take an exam scheduled on a religious holiday you must contact me within the first two weeks of class so that an alternative test date can be arranged for you.  Otherwise you will be expected/required to take the Comprehensive exam in place of the missed exam. 

 

Academic Dishonesty: Academic dishonesty is a serious offense at the College because it diminishes the quality of scholarship and the learning experience for everyone on campus.  An act of Academic Dishonesty may lead to sanctions including a reduction in grade (up to and including a permanent F for the course), probation, suspension, or expulsion.  Academic dishonesty includes cheating, fabrication, plagiarism, submitting the same paper or work for more than one class, and facilitating academic dishonesty.  For definitions and more information, see the Student Handbook which is available online through Metro-Connect. If I catch a student cheating I will give them a 0 for that exam.  If they are caught cheating a second time I will flunk them and notify the MSCD administration.

 

Disruptive behavior:  Any student that is rude enough to disrupt the class will be penalized.  If a student is frequently tardy, talks during lecture, etc. they will be given 1 warning.  After that they will be asked to leave and 5 points will be deducted from their next exam score.

 

GENERAL INFORMATION

Advising for Biology is usually done on a walk-in basis and can be done by most of the full time Biology faculty or the department chair, Dr. Joan L. Foster.  The graduation requirements are complex, so it is best to speak to a Biology Advisor for academic advising.  The Departmental Office does have a turnstile of advising sheets just inside of the door.

 

Department address:             The Metropolitan State College of Denver                    

                                                Department of Biology 

                                                Campus Box 53

                                                P.O. Box 173362                                                                                                                                 Science 213    

                                                Denver, CO  80217‑3362

 

Department Office:                303-556‑3167            

                     Fax:                    303-556-6426

 

Department Chair:                 Dr. Joan L. Foster

                                                Email: fosterjl@mscd.edu         

                                                                                   

Important timelines for the semester:         

Check this weblink for the drop/add dates:                                                       

http://www.mscd.edu/academic/acal.htm#200530-2

 

 

 

Tentative Schedule – Fall 2005

General Biology 1080

 

Class

Day

Date

Topics

Tentative

1

T

8/23

Course intro

Intro

2

H

8/25

Evolutionary Framework; Atoms, Molecules, Chemical Bonds, Water

Ch1(1-18)

Ch2(19-34)

3

T

8/30

Atoms, Molecules, Chemical Bonds, Water

Ch2(19-34)

4

H

9/1

Macromolecules

Ch3(35-60)

5

T

9/6

History of Life on Earth

Ch4(61-78)

6

H

9/8

Catch-up/Review

 

7

T

9/13

Exam I

Chapters 1-4

8

H

9/15

Cells & Cell Structure 

Ch5(79-104)

9

T

9/20

Cell Membranes

Ch6(105-124)

10

H

9/22

Cell-Cell Interactions

Ch7(125-142)

11

T

9/27

Energy and Metabolism

Ch8(143-158)

12

H

9/29

Catch up/Review

 

13

T

10/4

EXAM II

Chps 5-8

14

H

10/6

Cellular Respiration

Ch9(159-184)

15

T

10/11

Photosynthesis

Ch10(185-206)

16

H

10/13

Cell Division

Ch11(207-226)

17

T

10/18

Sexual Reproduction

Ch12(227-240)

18

H

10/20

Patterns of Inheritance

Ch13(241-278)

19

T

10/25

Patterns of Inheritance

Ch13(241-278)

20

H

10/27

Catch-up/Course Evaluations

 

21

T

11/01

EXAM III

Chps 9-13

22

H

11/03

DNA

Ch14(279-300)

23

T

11/08

DNA/Genes

Ch14(279-300); Ch15(301-318)

24

H

11/10

Genes

Ch15(301-318)

25

T

11/15

Cancer Biology

Ch20

26

H

11/17

Evolution-Population Genetics

 

27

T

11/22

No Class - Thanksgiving Break

 

28

H

11/24

No Class - Thanksgiving Break

Ch21(433-452)

29

T

11/29

Evidence for Evolution

Ch22(453-470)

30

H

12/1

Catch up/Review

Chps 14,15,19, 21, 22

31

T

12/6

EXAM IV

Chps 14,15,19, 21, 22

32

H

12/8

FINALS WEEK

 

33

T

12/12

 

 

 

 

Please keep in mind that this schedule is tentative and is subject to change

General Introduction to Biology

Objectives

 

Chapter 1:  The Science of Biology

1.                  What 7 basic characteristics do all living organisms share?

 

2.                  The biological world is hierarchical.  Describe the hierarchy for the following levels:

a.       The cellular level

b.      The organismic level

c.       The population level

 

3.                  There are two basic types of reasoning.  What are they and explain the difference between them.

 

4.         What is a hypothesis?  How is it tested?

 

5.         In an experiment, what are controls? What are variables?

 

6.         What is a theory?  How do scientists use the term?

 

7.         What are the steps of research?

 

8.         On what observations and theories did Darwin use to develop his evolutionary theory?

 

9.                  What was the contribution of the economist Malthus’s Essay on the Principle of Population?

 

10.       Explain natural selection and artificial selection.

 

11.       What other information is used to support the theory of evolution? (at least 5 lines of evidence)

 

12.       What are the 4 themes that unify biology?

 

Chapter 2:  The Nature of Molecules

1.   What is an element?  How many naturally occurring elements are there? (in section on periodic table)

2.   Describe the structure of an atom (include charges).

 

3.   What are isotopes?

 

4.   In what order are the orbitals/energy levels filled?

 

5.   What is the atomic number?

 

6.   What is the atomic weight?

7.   What are the outer-most orbitals like in an unreactive atom? (they are full of electrons)

 

8.   What is a molecule?  What is a bond?

 

9.   What is an ion? 

 

10.  What is an ionic bond?  How is it formed?

 

11.  What is a covalent bond?  Is it stronger or weaker than an ionic bond?

 

12.  How many covalent bonds can a carbon atom form?  What are double and triple bonds?

 

13.  What are chemical reactions?  Give an example.

 

14.   How much of a living organism is water?

 

15.   Draw the structure of a water molecule.

 

16.   Why is water polar?  Draw the polarity.

 

17.   What is hydrogen bonding?

 

18.   Is hydrogen bonding strong or weak?  Is it permanent or fleeting?

 

19.   Define cohesion.  What is surface tension?  Give an example of the effect of surface tension.

 

20.   Define adhesion.  What is capillary action?  Where or how can capillary action be observed?

 

21.   What is “specific heat”?  Does water have high or low specific heat? 

When have you observed the specific heat of water and what impact does it have on life.

 

22.   Water has a high heat of vaporization.  What does that mean?

 

23.  What happens to the density of water as it gets colder?  At what temperature is it most dense? 

            What are the implications to life?

 

24.  Define solution, solvent and solutes.  Does a solution have to be liquid?

 

25.  Is water polar or nonpolar?  Do polar substances dissolve in water? 

Do nonpolar substances dissolve in water?

 

26.  What does hydrophilic mean?  Is it polar or nonpolar?

Give an example of a hydrophilic substance.

 

27.  What does hydrophobic mean?  Is it polar or nonpolar?

            Give an example of a hydrophobic substance.

 

28.  What is the ionization or dissociation of water?  Does most of the water dissociate?

 

29.  What is an acid?  What does it release in water?

 

30.  What is a base?  What does it release in water?  ( or What does it accept?)

 

31.  What is a pH scale?  What does it measure?  What are the acidic pH’s?  What are the basic pH’s?  What is neutral?

 

Chapter 3: The Chemical Building Blocks of Life

1.         Describe what I mean by “the carbon backbone”.  What does it determine?  What are hydrocarbons?  Are they polar? Are they hydrophobic?

 

2.  What is a functional group?

 

3.   What is a dehydration synthesis?  What does it accomplish?  Is it anabolic or catabolic?

 

4.  What is hydrolysis?  What does it accomplish?  Is it anabolic or catabolic?

 

5.  What are the four major classes of biochemicals?

 

6.  What are the functions of proteins?

 

7.  What building blocks are used to make proteins?

 

8.  What is the general structure of an amino acid?  How are they linked together?

 

9.  What two things help maintain a protein’s shape?

 

10.  What are chaperone proteins?

 

11.  What does “denatured” mean?  What causes it?  Can it be reversed?

 

12.  What are the 2 types of nucleic acids?  What are    their functions?

 

13.  What is a nucleotide?

 

14.  Describe a DNA molecule.  Describe a RNA molecule.

 

15.  How is a RNA molecule different from a DNA molecule? How is it similar?

 

16.  What are the 4 nitrogenous bases in DNA?  In RNA?

 

17.  What is ATP?  What does it do for cells?

 

18.  What are lipids?  Are they polar or nonpolar?

 

19.  What are the functions of lipids?

 

20.  What is a phospholipid?  What part is hydrophilic?  What part is hydrophobic? 

            Why do they form lipid bilayers?

 

21.  Given a glycerol and 3 fatty acids, synthesize a fat. What kind of reaction is required?

 

22.  What are saturated fats?  What are their sources?  Are they generally liquid or solid?

 

23.  What are unsaturated fats?  What are their sources?  Are they generally liquid or solid?

 

24.  What is the general shape of a steroid?  Are they hydrophobic?  What is the role of cholesterol?  

       What do the other steroids do?

 

25.  What is a carbohydrate?  What ratio of atoms does it have?

 

26.  What is a monosaccharide, disaccharide, polysaccharide?

            Give examples of each.  Are they polar?

 

27.   Recognize the 3 forms of glucose. (Is it a mono, di or polysaccharide?)  What is the role of glucose

            in organisms?

 

28.   Given the initial structures for alpha-glucose and fructose, make a condensation reaction to form the

            disaccharide sucrose.   

 

29.   What is the difference between starch (or glycogen) and cellulose?  What effect does that difference

            have on the digestion of those compounds?

 

Chapter 4-The Origin and Early History of Life

1.  What are the fundamental properties of life?

 

2.  What 3 theories did the text give for the origin of life?

 

3.  The best known hypothesis is that life began at the ocean’s edge.  Explain this hypothesis.  What supports this idea and what are its weaknesses.

4.  The hypothesis that is gaining in popularity is that life began at the ocean’s deep sea vents.  What are these and what kinds of organisms that live there are we interested in from an origin of life stand point.

 

5.   What is the theory of chemical evolution?  How does the Miller-Urey experiment fit in.  What was Oparin’s “bubble hypothesis”?

 

6.   What elements were present on prebiotic earth?  Was molecular oxygen present?

 

7.  What are the oldest fossils?  When are they dated to?

 

8.  What are archaebacteria?  What types of environments do they often live in?  How does this tie into

the deep sea vent origin of life hypothesis?

 

9.   What are bacteria?  What role did they play in the formation of the modern atmosphere?

 

10.   List the characteristics of eukaryotes. 

 

11.  Learn the characteristics of each of the 6 Kingdoms of classification used by your textbook.

            (Prokaryote or eukaryote; cell wall?; single or multi-cell; mode of nutrition; examples)

 

12.       Be able to draw a time line containing the hypothetical dates of when earth formed, first organisms arose, first oxygen-generating cyanobacteria and first eukaryotic cells formed.

Atom: The defining structure of an element, which cannot be broken by any chemical means.

Examples: hydrogen, carbon-14, zinc, cesium, Cl- (a substance can be an atom and an isotope or ion at the same time)

 

Atomic Mass: The average mass of atoms of an element, calculated using the relative abundance of isotopes in a naturally-occurring element.

Also Known As: Atomic Weight

Examples: The atomic mass of carbon is 12.011; the atomic mass of hydrogen is 1.0079

 

Atomic Number: The number of protons in an element.

Examples: The atomic number of hydrogen is 1; the atomic number of carbon is 6

 

Buffer: Definition: A solution containing either a weak acid and its salt or a weak base and its salt, which is resistant to changes in pH.

Examples: blood

 

Carbohydrate: A class of organic compounds having the general formula Cm(H2O)n.

Examples: Glucose, fructose, sucrose, starch, cellulose

 

Covalent Bond: A chemical link between two atoms in which electrons are shared between them.

Examples: There is a covalent bond between the oxygen and each hydrogen in a water molecule (H2O). Each of the covalent bonds contains two electrons - one from a hydrogen atom and one from the oxygen atom. Both atoms share the electrons.

 

Electrolyte: A substance which forms ions in an aqueous (water) solution.

Example: NaCl forms Na+ and Cl- in water.

 

Electron: a negatively charged component of an atom. Electrons exist outside of and surrounding the atom nucleus. Each electron carries one unit of negative charge and has a very small mass as compared with that of a neutron or proton.

 

Isotope: Atoms with the same number of protons, but differing numbers of neutrons. Isotopes are different forms of a single element.

Examples: Carbon 12 and Carbon 14 are both isotopes of carbon, one with 6 neutrons and one with 8 neutrons (both with 6 protons).

 

Mass number: an integer equal to the sum of the number of protons and neutrons of an atomic nucleus.

Examples: 3717Cl has a mass number of 37. Its nucleus contains 17 protons and 20 neutrons.

 

Neutron: The particle in the atomic nucleus with a mass = 1 and charge = 0.

 

Molecular Equation - Equation for a chemical reaction in which all formulas are written as if all substances existed as molecules; only complete formulas are used.

Molecular Formula - Formula that indicates the actual number of atoms present in a molecule of a molecular substance.

Molecule -The smallest particle of an element or compound capable of a stable, independent existence.

Element - A substance that cannot be decomposed into simpler substances by chemical means.

Enzyme - A protein that acts as a catalyst in biological systems.

 

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